Gene detail information of Glyur000170s00011032.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52440.1 | 3.00E-36 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007162976.1 | 1.16E-88 | hypothetical protein PHAVU_001G196100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SVC5|DOF35_ARATH | 1.00E-47 | Dof zinc finger protein DOF3.5 |
| trEMBL | tr|V7D0D2|V7D0D2_PHAVU | 4.00E-89 | Uncharacterized protein {ECO:0000313|EMBL:ESW34970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 276670 | 277509 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00011032.1 | PF02701.10 | zf-Dof | 15 | 68 | 9.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.130 |
| SRR1783600 | control | 0.131 |
| SRR1783602 | moderate drought stress | 0.128 |
| SRR1811619 | moderate drought stress | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.539 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.311 |
| SRR2967015 | Control (Tissue:root) | 0.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.020 |
| SRR9715740 | Leave | 0.038 |
| SRR9715741 | Leave | 1.200 |
| SRR9715739 | Root | 0.059 |
| SRR9715742 | Root | 0.110 |
| SRR9715743 | Root | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.116 |
| SRR8400027 | Control-Root | 0.041 |