Gene detail information of Glyur000171s00016594.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52700.1 | 2.00E-78 | alpha/beta-Hydrolases superfamily protein |
| NR | KHN22471.1 | 6.28E-127 | Acyl-protein thioesterase 2 [Glycine soja] |
| COG | YP_007541785.1 | 3.00E-23 | carboxylesterase [Glaciecola psychrophila 170] |
| trEMBL | tr|K7M8V9|K7M8V9_SOYBN | 1.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G01350.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00171 | 22630 | 27537 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06130 | LYPLA2 | EC:3.1.1.5 | Glycerophospholipid metabolism | map00564 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000171s00016594.1 | PF02230.11 | Abhydrolase_2 | 25 | 211 | 1.50E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.399 |
| SRR1783600 | control | 6.459 |
| SRR1783602 | moderate drought stress | 8.564 |
| SRR1811619 | moderate drought stress | 8.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.048 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.419 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.978 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.933 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 51.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.037 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.833 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.579 |
| SRR2967015 | Control (Tissue:root) | 19.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.434 |
| SRR9715740 | Leave | 5.401 |
| SRR9715741 | Leave | 2.975 |
| SRR9715739 | Root | 3.603 |
| SRR9715742 | Root | 18.151 |
| SRR9715743 | Root | 12.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.763 |
| SRR8749028 | MeJA induced 9h | 0.910 |
| SRR8749029 | MeJA induced 9h | 2.458 |
| SRR8749030 | Uninduced | 0.265 |
| SRR8749031 | Uninduced | 0.309 |
| SRR8749032 | Uninduced | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.623 |
| SRR8400027 | Control-Root | 23.266 |