Gene detail information of Glyur000171s00016599.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G80210.12.00E-114Mov34/MPN/PAD-1 family protein
NRNP_001240150.10uncharacterized protein LOC100784991 [Glycine max]
COGYP_001657679.11.00E-06hypothetical protein MAE_26650 [Microcystis aeruginosa NIES-843]
Swissprottr|Q8LAZ7|CSN5B_ARATH2.00E-08COP9 signalosome complex subunit 5b
trEMBLtr|C6T923|C6T923_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G01310.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001714046146213+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11864BRCC3, BRCC36 EC:3.4.19.- Homologous recombination map03440
NOD-like receptor signaling pathwaymap04621


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000171s00016599.1PF01398.16JAB31103.70E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.573
SRR1783600control9.885
SRR1783602moderate drought stress9.746
SRR1811619moderate drought stress9.810

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.709
DRR006520Root Summer glycyrrhizin high producing strain21.982
DRR006521Root Winter glycyrrhizin high producing strain27.368
DRR006522Root Winter glycyrrhizin high producing strain26.205
DRR006523Root Summer glycyrrhizin low producing strain20.182
DRR006524Root Summer glycyrrhizin low producing strain18.904
DRR006525Leaf Summer glycyrrhizin high producing strain16.195
DRR006526Leaf Summer glycyrrhizin high producing strain16.549

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.798
SRR2868004Drought Stress(Tissue:root)29.501
SRR2967015Control (Tissue:root)30.105

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.426
SRR9715740Leave20.597
SRR9715741Leave22.424
SRR9715739Root6.987
SRR9715742Root16.383
SRR9715743Root12.601

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.947
SRR8749028MeJA induced 9h14.940
SRR8749029MeJA induced 9h16.868
SRR8749030Uninduced8.644
SRR8749031Uninduced6.489
SRR8749032Uninduced8.162

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.502
SRR8400027Control-Root32.660

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved