Gene detail information of Glyur000171s00016602.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66810.1 | 2.00E-09 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_004486691.1 | 7.70E-52 | PREDICTED: zinc finger protein 36, C3H1 type-like 2-B-like [Cicer arietinum] |
| Swissprot | tr|Q10MN8|C3H21_ORYSJ | 8.00E-12 | Putative zinc finger CCCH domain-containing protein 21 |
| trEMBL | tr|V7BXJ1|V7BXJ1_PHAVU | 7.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:ESW22712.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00171 | 55204 | 56976 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000171s00016602.1 | PF00642.19 | zf-CCCH | 50 | 73 | 0.0002 |
| Glyur000171s00016602.1 | PF00642.19 | zf-CCCH | 91 | 115 | 0.00014 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.119 |
| SRR1783600 | control | 0.099 |
| SRR1783602 | moderate drought stress | 0.008 |
| SRR1811619 | moderate drought stress | 0.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.987 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.380 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.364 |
| SRR2967015 | Control (Tissue:root) | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.715 |
| SRR9715740 | Leave | 1.406 |
| SRR9715741 | Leave | 1.457 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.229 |
| SRR9715743 | Root | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.359 |
| SRR8749028 | MeJA induced 9h | 3.990 |
| SRR8749029 | MeJA induced 9h | 4.050 |
| SRR8749030 | Uninduced | 1.225 |
| SRR8749031 | Uninduced | 1.035 |
| SRR8749032 | Uninduced | 0.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.950 |
| SRR8400027 | Control-Root | 0.852 |