Gene detail information of Glyur000171s00016607.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80170.1 | 1.00E-94 | Pectin lyase-like superfamily protein |
| NR | XP_004486686.1 | 0 | PREDICTED: probable polygalacturonase At1g80170-like isoform X1 [Cicer arietinum] |
| COG | YP_001179193.1 | 7.00E-24 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|Q94AJ5|PGLR5_ARATH | 1.00E-127 | Probable polygalacturonase At1g80170 (Precursor) |
| trEMBL | tr|K7M8U7|K7M8U7_SOYBN | 2.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G01250.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00171 | 92039 | 96429 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000171s00016607.1 | PF00295.12 | Glyco_hydro_28 | 93 | 250 | 6.50E-39 |
| Glyur000171s00016607.1 | PF00295.12 | Glyco_hydro_28 | 255 | 330 | 4.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.222 |
| SRR1783600 | control | 9.746 |
| SRR1783602 | moderate drought stress | 5.929 |
| SRR1811619 | moderate drought stress | 5.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.998 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.451 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.883 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.883 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.388 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.770 |
| SRR2967015 | Control (Tissue:root) | 8.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.950 |
| SRR9715740 | Leave | 2.627 |
| SRR9715741 | Leave | 2.589 |
| SRR9715739 | Root | 4.532 |
| SRR9715742 | Root | 5.387 |
| SRR9715743 | Root | 5.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.064 |
| SRR8749028 | MeJA induced 9h | 0.308 |
| SRR8749029 | MeJA induced 9h | 0.540 |
| SRR8749030 | Uninduced | 0.110 |
| SRR8749031 | Uninduced | 0.430 |
| SRR8749032 | Uninduced | 0.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.549 |
| SRR8400027 | Control-Root | 14.502 |