Gene detail information of Glyur000171s00016628.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02090.10SNF2 domain-containing protein / helicase domain-containing protein
NRXP_007153116.10hypothetical protein PHAVU_003G008000g [Phaseolus vulgaris]
COGNP_847649.14.00E-53helicase [Bacillus anthracis str. Ames]
Swissprottr|Q9ZUL5|CHR19_ARATH0Protein CHROMATIN REMODELING 19 {ECO:0000303|PubMed:16547115}
trEMBLtr|V7C760|V7C760_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW25110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00171258665278004+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14439SMARCAD1 EC:3.6.4.12 Signaling pathways regulating pluripotency of stem cells map04550


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000171s00016628.1PF00176.18SNF2_N2065094.50E-56
Glyur000171s00016628.1PF00271.26Helicase_C6357092.20E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.835
SRR1783600control10.855
SRR1783602moderate drought stress14.417
SRR1811619moderate drought stress14.228

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.131
DRR006520Root Summer glycyrrhizin high producing strain13.636
DRR006521Root Winter glycyrrhizin high producing strain17.090
DRR006522Root Winter glycyrrhizin high producing strain17.194
DRR006523Root Summer glycyrrhizin low producing strain17.937
DRR006524Root Summer glycyrrhizin low producing strain17.541
DRR006525Leaf Summer glycyrrhizin high producing strain9.919
DRR006526Leaf Summer glycyrrhizin high producing strain9.925

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.661
SRR2868004Drought Stress(Tissue:root)19.185
SRR2967015Control (Tissue:root)18.787

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.813
SRR9715740Leave14.913
SRR9715741Leave14.692
SRR9715739Root2.419
SRR9715742Root10.718
SRR9715743Root9.932

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.371
SRR8749028MeJA induced 9h16.344
SRR8749029MeJA induced 9h10.957
SRR8749030Uninduced8.651
SRR8749031Uninduced8.768
SRR8749032Uninduced8.415

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.401
SRR8400027Control-Root15.570

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved