Gene detail information of Glyur000172s00014872.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01280.1 | 3.00E-79 | Homeodomain-like superfamily protein |
| NR | XP_004510747.1 | 0 | PREDICTED: transcription factor ASG4-like [Cicer arietinum] |
| Swissprot | tr|C0SVG5|RVE5_ARATH | 3.00E-111 | Protein REVEILLE 5 |
| trEMBL | tr|I1MKS3|I1MKS3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 6370 | 11566 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014872.1 | PF00249.26 | Myb_DNA-binding | 64 | 108 | 5.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.956 |
| SRR1783600 | control | 20.068 |
| SRR1783602 | moderate drought stress | 33.506 |
| SRR1811619 | moderate drought stress | 33.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.434 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.595 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 82.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.057 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.382 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.897 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.346 |
| SRR2967015 | Control (Tissue:root) | 35.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.696 |
| SRR9715740 | Leave | 24.152 |
| SRR9715741 | Leave | 25.343 |
| SRR9715739 | Root | 7.134 |
| SRR9715742 | Root | 21.771 |
| SRR9715743 | Root | 19.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.013 |
| SRR8749028 | MeJA induced 9h | 24.503 |
| SRR8749029 | MeJA induced 9h | 18.437 |
| SRR8749030 | Uninduced | 27.852 |
| SRR8749031 | Uninduced | 10.550 |
| SRR8749032 | Uninduced | 12.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.803 |
| SRR8400027 | Control-Root | 22.526 |