Gene detail information of Glyur000172s00014876.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61510.1 | 1.00E-180 | ACC synthase 1 |
| NR | XP_006598931.1 | 0 | PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1-like [Glycine max] |
| COG | YP_004582080.1 | 1.00E-70 | 1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|Q9MB95|1A11_PRUMU | 0 | 1-aminocyclopropane-1-carboxylate synthase 1 |
| trEMBL | tr|I1MKS0|I1MKS0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 30734 | 33847 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20772 | ACS1_2_6 | EC:4.4.1.14 | Cysteine and methionine metabolism | map00270 |
| MAPK signaling pathway - plant | map04016 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014876.1 | PF00155.16 | Aminotran_1_2 | 48 | 430 | 7.60E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.025 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.589 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.478 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.213 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.525 |
| SRR2967015 | Control (Tissue:root) | 0.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.785 |
| SRR9715740 | Leave | 0.127 |
| SRR9715741 | Leave | 0.612 |
| SRR9715739 | Root | 0.149 |
| SRR9715742 | Root | 0.695 |
| SRR9715743 | Root | 0.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.185 |
| SRR8749028 | MeJA induced 9h | 65.516 |
| SRR8749029 | MeJA induced 9h | 72.691 |
| SRR8749030 | Uninduced | 69.370 |
| SRR8749031 | Uninduced | 11.293 |
| SRR8749032 | Uninduced | 42.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.902 |
| SRR8400027 | Control-Root | 0.305 |