Gene detail information of Glyur000172s00014881.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G46110.12.00E-145ketopantoate hydroxymethyltransferase 1
NRXP_003622496.103-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula]
COGYP_003552958.18.00E-893-methyl-2-oxobutanoate hydroxymethyltransferase [Aminobacterium colombiense DSM 12261]
Swissprottr|O82357|PANB1_ARATH03-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (Precursor)
trEMBLtr|A0A072TNM1|A0A072TNM1_MEDTR03-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000313|EMBL:KEH18796.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001726569668449-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00606panB EC:2.1.2.11 Pantothenate and CoA biosynthesis map00770


Gene Ontology

biological_process

GO:0015940  pantothenate biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0003864  3-methyl-2-oxobutanoate hydroxymethyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000172s00014881.1PF02548.10Pantoate_transf403052.40E-102


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.350
SRR1783600control20.415
SRR1783602moderate drought stress23.684
SRR1811619moderate drought stress23.626

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.255
DRR006520Root Summer glycyrrhizin high producing strain20.260
DRR006521Root Winter glycyrrhizin high producing strain9.029
DRR006522Root Winter glycyrrhizin high producing strain8.947
DRR006523Root Summer glycyrrhizin low producing strain17.008
DRR006524Root Summer glycyrrhizin low producing strain17.047
DRR006525Leaf Summer glycyrrhizin high producing strain9.255
DRR006526Leaf Summer glycyrrhizin high producing strain9.080

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.434
SRR2868004Drought Stress(Tissue:root)19.186
SRR2967015Control (Tissue:root)15.892

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.691
SRR9715740Leave11.190
SRR9715741Leave8.821
SRR9715739Root10.878
SRR9715742Root10.411
SRR9715743Root9.031

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.553
SRR8749028MeJA induced 9h9.704
SRR8749029MeJA induced 9h10.974
SRR8749030Uninduced7.380
SRR8749031Uninduced5.657
SRR8749032Uninduced6.078

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.516
SRR8400027Control-Root12.345

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved