Gene detail information of Glyur000172s00014889.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46160.1 | 5.00E-52 | RING/U-box superfamily protein |
| NR | KEH18782.1 | 1.63E-86 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
| Swissprot | tr|O82353|ATL67_ARATH | 5.00E-69 | RING-H2 finger protein ATL67 |
| trEMBL | tr|A0A072TMZ4|A0A072TMZ4_MEDTR | 6.00E-87 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH18782.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 97476 | 98051 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014889.1 | PF13639.1 | zf-RING_2 | 117 | 160 | 2.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.064 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.549 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.616 |
| SRR2967015 | Control (Tissue:root) | 4.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.455 |
| SRR9715740 | Leave | 10.264 |
| SRR9715741 | Leave | 6.647 |
| SRR9715739 | Root | 0.345 |
| SRR9715742 | Root | 0.334 |
| SRR9715743 | Root | 0.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.458 |
| SRR8749028 | MeJA induced 9h | 5.304 |
| SRR8749029 | MeJA induced 9h | 8.537 |
| SRR8749030 | Uninduced | 4.897 |
| SRR8749031 | Uninduced | 1.667 |
| SRR8749032 | Uninduced | 6.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.336 |
| SRR8400027 | Control-Root | 0.664 |