Gene detail information of Glyur000172s00014897.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01210.1 | 0 | glycosyl transferase family 1 protein |
| NR | KEH18768.1 | 0 | group 1 family glycosyltransferase [Medicago truncatula] |
| COG | YP_003641557.1 | 2.00E-06 | group 1 glycosyl transferase [Thermincola potens JR] |
| trEMBL | tr|A0A072TPJ6|A0A072TPJ6_MEDTR | 0 | Group 1 family glycosyltransferase {ECO:0000313|EMBL:KEH18768.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 129542 | 137015 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014897.2 | PF00534.15 | Glycos_transf_1 | 399 | 496 | 3.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.192 |
| SRR1783600 | control | 12.248 |
| SRR1783602 | moderate drought stress | 10.275 |
| SRR1811619 | moderate drought stress | 10.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.323 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.530 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.981 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.756 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.624 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.569 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.813 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.282 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.725 |
| SRR2967015 | Control (Tissue:root) | 33.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 40.068 |
| SRR9715740 | Leave | 23.946 |
| SRR9715741 | Leave | 35.407 |
| SRR9715739 | Root | 4.658 |
| SRR9715742 | Root | 32.147 |
| SRR9715743 | Root | 27.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.859 |
| SRR8749028 | MeJA induced 9h | 13.798 |
| SRR8749029 | MeJA induced 9h | 8.403 |
| SRR8749030 | Uninduced | 8.650 |
| SRR8749031 | Uninduced | 2.401 |
| SRR8749032 | Uninduced | 2.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.384 |
| SRR8400027 | Control-Root | 30.534 |