Gene detail information of Glyur000172s00014905.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61590.2 | 2.00E-146 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004510707.1 | 0 | PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] |
| Swissprot | tr|Q9M310|FBK77_ARATH | 0 | F-box/kelch-repeat protein At3g61590 |
| trEMBL | tr|V7ANN0|V7ANN0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07174.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 190662 | 191882 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014905.1 | PF00646.28 | F-box | 46 | 84 | 5.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.735 |
| SRR1783600 | control | 9.840 |
| SRR1783602 | moderate drought stress | 7.391 |
| SRR1811619 | moderate drought stress | 7.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.741 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.087 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.609 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.577 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.270 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.987 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.747 |
| SRR2967015 | Control (Tissue:root) | 14.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.176 |
| SRR9715740 | Leave | 10.474 |
| SRR9715741 | Leave | 8.495 |
| SRR9715739 | Root | 15.064 |
| SRR9715742 | Root | 18.609 |
| SRR9715743 | Root | 19.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.029 |
| SRR8749028 | MeJA induced 9h | 6.352 |
| SRR8749029 | MeJA induced 9h | 4.655 |
| SRR8749030 | Uninduced | 3.616 |
| SRR8749031 | Uninduced | 1.578 |
| SRR8749032 | Uninduced | 2.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.974 |
| SRR8400027 | Control-Root | 15.709 |