Gene detail information of Glyur000172s00014918.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G59890.11.00E-119Dihydrodipicolinate reductase, bacterial/plant
NRXP_004510719.10PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like isoform X2 [Cicer arietinum]
COGYP_003251048.13.00E-75dihydrodipicolinate reductase [Fibrobacter succinogenes subsp. succinogenes S85]
Swissprottr|Q8LB01|DAPB2_ARATH2.00E-1484-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (Precursor)
trEMBLtr|I3S7Y0|I3S7Y0_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK36372.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00172266185270013-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00215dapB EC:1.17.1.8 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300
Monobactam biosynthesismap00261


Gene Ontology

biological_process

GO:0009089  lysine biosynthetic process via diaminopimelate

GO:0055114  oxidation-reduction process


molecular_function

GO:0008839  4-hydroxy-tetrahydrodipicolinate reductase


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000172s00014918.1PF01113.15DapB_N731969.00E-15
Glyur000172s00014918.1PF05173.9DapB_C1913155.90E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.957
SRR1783600control47.526
SRR1783602moderate drought stress27.714
SRR1811619moderate drought stress27.901

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.534
DRR006520Root Summer glycyrrhizin high producing strain51.005
DRR006521Root Winter glycyrrhizin high producing strain17.745
DRR006522Root Winter glycyrrhizin high producing strain17.351
DRR006523Root Summer glycyrrhizin low producing strain32.136
DRR006524Root Summer glycyrrhizin low producing strain32.672
DRR006525Leaf Summer glycyrrhizin high producing strain16.011
DRR006526Leaf Summer glycyrrhizin high producing strain15.861

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.824
SRR2868004Drought Stress(Tissue:root)19.862
SRR2967015Control (Tissue:root)20.698

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.713
SRR9715740Leave16.221
SRR9715741Leave9.935
SRR9715739Root15.363
SRR9715742Root19.971
SRR9715743Root17.694

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.139
SRR8749028MeJA induced 9h14.249
SRR8749029MeJA induced 9h18.057
SRR8749030Uninduced2.571
SRR8749031Uninduced0.913
SRR8749032Uninduced1.493

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.089
SRR8400027Control-Root42.739

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved