Gene detail information of Glyur000173s00011812.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03780.1 | 7.00E-16 | TRF-like 10 |
| NR | XP_003601481.1 | 4.18E-90 | hypothetical protein MTR_3g082160 [Medicago truncatula] |
| Swissprot | tr|Q9M2X3|TRB3_ARATH | 9.00E-07 | Telomere repeat-binding factor 3 |
| trEMBL | tr|G7J835|G7J835_MEDTR | 2.00E-90 | Myb-like DNA-binding domain protein {ECO:0000313|EMBL:AES71732.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 53959 | 57814 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011812.1 | PF00249.26 | Myb_DNA-binding | 286 | 339 | 7.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.742 |
| SRR1783600 | control | 8.604 |
| SRR1783602 | moderate drought stress | 10.421 |
| SRR1811619 | moderate drought stress | 10.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.190 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.229 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.852 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.594 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.809 |
| SRR2967015 | Control (Tissue:root) | 6.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.380 |
| SRR9715740 | Leave | 7.762 |
| SRR9715741 | Leave | 5.393 |
| SRR9715739 | Root | 5.953 |
| SRR9715742 | Root | 5.889 |
| SRR9715743 | Root | 6.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.847 |
| SRR8749028 | MeJA induced 9h | 5.726 |
| SRR8749029 | MeJA induced 9h | 2.129 |
| SRR8749030 | Uninduced | 0.860 |
| SRR8749031 | Uninduced | 0.148 |
| SRR8749032 | Uninduced | 0.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.927 |
| SRR8400027 | Control-Root | 11.361 |