Gene detail information of Glyur000173s00011831.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G48250.14.00E-111B-box type zinc finger protein with CCT domain
NRKHN08332.10Zinc finger protein CONSTANS-LIKE 9 [Glycine soja]
Swissprottr|Q9LUA9|COL10_ARATH6.00E-148Zinc finger protein CONSTANS-LIKE 10
trEMBLtr|K7N1D6|K7N1D6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G07051.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00173172420176482-


Gene family

Gene familysubfamily
Transcription Factors FamilyOrphans


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000173s00011831.2PF06203.9CCT3513943.30E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.113
SRR1783600control1.119
SRR1783602moderate drought stress1.261
SRR1811619moderate drought stress1.229

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.859
DRR006520Root Summer glycyrrhizin high producing strain45.296
DRR006521Root Winter glycyrrhizin high producing strain19.868
DRR006522Root Winter glycyrrhizin high producing strain20.050
DRR006523Root Summer glycyrrhizin low producing strain54.139
DRR006524Root Summer glycyrrhizin low producing strain55.089
DRR006525Leaf Summer glycyrrhizin high producing strain59.788
DRR006526Leaf Summer glycyrrhizin high producing strain59.822

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.246
SRR2868004Drought Stress(Tissue:root)2.882
SRR2967015Control (Tissue:root)21.198

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.110
SRR9715740Leave15.870
SRR9715741Leave9.334
SRR9715739Root0.205
SRR9715742Root1.302
SRR9715743Root1.038

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.080
SRR8749028MeJA induced 9h30.491
SRR8749029MeJA induced 9h23.032
SRR8749030Uninduced2.680
SRR8749031Uninduced3.567
SRR8749032Uninduced9.319

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.923
SRR8400027Control-Root17.428

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved