Gene detail information of Glyur000173s00011834.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G04350.20AMP-dependent synthetase and ligase family protein
NRXP_004502114.10PREDICTED: long chain acyl-CoA synthetase 8-like [Cicer arietinum]
COGYP_630755.14.00E-77long-chain-fatty-acid--CoA ligase [Myxococcus xanthus DK 1622]
Swissprottr|Q9SJD4|LACS8_ARATH0Long chain acyl-CoA synthetase 8
trEMBLtr|K7N1D8|K7N1D8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G07280.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00173199351204716+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000173s00011834.1PF00501.23AMP-binding1285933.50E-95


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.267
SRR1783600control25.399
SRR1783602moderate drought stress32.289
SRR1811619moderate drought stress31.855

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.525
DRR006520Root Summer glycyrrhizin high producing strain39.890
DRR006521Root Winter glycyrrhizin high producing strain50.654
DRR006522Root Winter glycyrrhizin high producing strain48.630
DRR006523Root Summer glycyrrhizin low producing strain32.696
DRR006524Root Summer glycyrrhizin low producing strain32.483
DRR006525Leaf Summer glycyrrhizin high producing strain20.358
DRR006526Leaf Summer glycyrrhizin high producing strain20.145

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.192
SRR2868004Drought Stress(Tissue:root)76.243
SRR2967015Control (Tissue:root)67.782

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.926
SRR9715740Leave37.578
SRR9715741Leave44.683
SRR9715739Root17.292
SRR9715742Root52.624
SRR9715743Root47.229

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.241
SRR8749028MeJA induced 9h106.006
SRR8749029MeJA induced 9h44.454
SRR8749030Uninduced42.528
SRR8749031Uninduced28.219
SRR8749032Uninduced28.362

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.751
SRR8400027Control-Root78.137

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved