Gene detail information of Glyur000173s00011836.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07670.1 | 2.00E-125 | Rubisco methyltransferase family protein |
| NR | XP_003542190.1 | 8.84E-179 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Glycine max] |
| Swissprot | tr|P94026|RBCMT_TOBAC | 1.00E-18 | Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|G7J8U8|G7J8U8_MEDTR | 5.00E-179 | Uncharacterized protein {ECO:0000313|EMBL:AFK38105.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 210804 | 213234 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011836.1 | PF00856.23 | SET | 99 | 145 | 1.60E-11 |
| Glyur000173s00011836.1 | PF09273.6 | Rubis-subs-bind | 178 | 270 | 1.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.699 |
| SRR1783600 | control | 1.705 |
| SRR1783602 | moderate drought stress | 2.187 |
| SRR1811619 | moderate drought stress | 2.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.757 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.631 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.907 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.005 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.249 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.895 |
| SRR2967015 | Control (Tissue:root) | 5.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.556 |
| SRR9715740 | Leave | 55.199 |
| SRR9715741 | Leave | 32.516 |
| SRR9715739 | Root | 0.620 |
| SRR9715742 | Root | 2.166 |
| SRR9715743 | Root | 2.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.488 |
| SRR8749028 | MeJA induced 9h | 6.185 |
| SRR8749029 | MeJA induced 9h | 2.452 |
| SRR8749030 | Uninduced | 2.382 |
| SRR8749031 | Uninduced | 0.708 |
| SRR8749032 | Uninduced | 1.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.092 |
| SRR8400027 | Control-Root | 5.608 |