Gene detail information of Glyur000173s00011844.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47720.46.00E-125Thiolase family protein
NRXP_009361536.10PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1 [Pyrus x bretschneideri]
COGYP_006408471.12.00E-119acetyl-CoA acetyltransferase [Belliella baltica DSM 15883]
Swissprottr|Q9FIK7|THIC2_ARATH0Probable acetyl-CoA acetyltransferase, cytosolic 2
trEMBLtr|Q5XMB8|Q5XMB8_TOBAC0Cytosolic acetoacetyl-coenzyme A thiolase {ECO:0000313|EMBL:AAU95618.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00173253728258297-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00626E2.3.1.9, atoB EC:2.3.1.9 Carbon metabolism map01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Propanoate metabolismmap00640
Butanoate metabolismmap00650
Carbon fixation pathways in prokaryotesmap00720
Fatty acid degradationmap00071
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Lysine degradationmap00310
Tryptophan metabolismmap00380
Terpenoid backbone biosynthesismap00900
Benzoate degradationmap00362
Two-component systemmap02020


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000173s00011844.2PF00108.18Thiolase_N692366.40E-52
Glyur000173s00011844.2PF02803.13Thiolase_C2463662.70E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.629
SRR1783600control54.710
SRR1783602moderate drought stress61.524
SRR1811619moderate drought stress60.642

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.074
DRR006520Root Summer glycyrrhizin high producing strain15.142
DRR006521Root Winter glycyrrhizin high producing strain0.140
DRR006522Root Winter glycyrrhizin high producing strain0.135
DRR006523Root Summer glycyrrhizin low producing strain1.126
DRR006524Root Summer glycyrrhizin low producing strain1.088
DRR006525Leaf Summer glycyrrhizin high producing strain178.859
DRR006526Leaf Summer glycyrrhizin high producing strain178.230

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)305.756
SRR2868004Drought Stress(Tissue:root)240.964
SRR2967015Control (Tissue:root)236.840

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave996.467
SRR9715740Leave1033.199
SRR9715741Leave913.938
SRR9715739Root23.348
SRR9715742Root119.011
SRR9715743Root101.397

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.547
SRR8749028MeJA induced 9h0.101
SRR8749029MeJA induced 9h0.057
SRR8749030Uninduced0.273
SRR8749031Uninduced0.066
SRR8749032Uninduced2.316

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root127.270
SRR8400027Control-Root132.859

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved