Gene detail information of Glyur000174s00018472.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70320.10ubiquitin-protein ligase 2
NRXP_004490459.10PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X1 [Cicer arietinum]
Swissprottr|Q8GY23|UPL1_ARATH0E3 ubiquitin-protein ligase UPL1
trEMBLtr|G7JYH3|G7JYH3_MEDTR0E3 ubiquitin-protein ligase UPL1-like protein {ECO:0000313|EMBL:AES98293.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001741085826542-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10592HUWE1, MULE, ARF-BP1 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000174s00018472.1PF06012.7DUF908873563.50E-30
Glyur000174s00018472.1PF06025.7DUF9134537883.60E-61
Glyur000174s00018472.1PF00627.26UBA128913252.30E-07
Glyur000174s00018472.1PF14377.1DUF4414254526389.60E-27
Glyur000174s00018472.1PF00632.20HECT337235856.60E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.082
SRR1783600control22.151
SRR1783602moderate drought stress23.813
SRR1811619moderate drought stress23.621

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.211
DRR006520Root Summer glycyrrhizin high producing strain18.957
DRR006521Root Winter glycyrrhizin high producing strain16.503
DRR006522Root Winter glycyrrhizin high producing strain16.190
DRR006523Root Summer glycyrrhizin low producing strain19.453
DRR006524Root Summer glycyrrhizin low producing strain19.219
DRR006525Leaf Summer glycyrrhizin high producing strain8.480
DRR006526Leaf Summer glycyrrhizin high producing strain8.405

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.384
SRR2868004Drought Stress(Tissue:root)45.518
SRR2967015Control (Tissue:root)45.677

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.195
SRR9715740Leave13.137
SRR9715741Leave14.441
SRR9715739Root5.140
SRR9715742Root48.065
SRR9715743Root41.457

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.679
SRR8749028MeJA induced 9h24.334
SRR8749029MeJA induced 9h25.231
SRR8749030Uninduced19.434
SRR8749031Uninduced21.490
SRR8749032Uninduced18.474

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.311
SRR8400027Control-Root35.752

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved