Gene detail information of Glyur000174s00018477.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24430.1 | 0 | Rhamnogalacturonate lyase family protein |
| NR | AES98299.2 | 0 | rhamnogalacturonate lyase B-like protein [Medicago truncatula] |
| trEMBL | tr|G7JYH9|G7JYH9_MEDTR | 0 | Rhamnogalacturonate lyase B-like protein {ECO:0000313|EMBL:AES98299.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00174 | 55988 | 62773 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000174s00018477.1 | PF06045.6 | Rhamnogal_lyase | 3 | 203 | 1.10E-89 |
| Glyur000174s00018477.1 | PF14686.1 | fn3_3 | 339 | 428 | 2.10E-24 |
| Glyur000174s00018477.1 | PF14683.1 | CBM-like | 432 | 606 | 2.70E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.887 |
| SRR1783600 | control | 1.868 |
| SRR1783602 | moderate drought stress | 1.017 |
| SRR1811619 | moderate drought stress | 1.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.707 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.677 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.149 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.631 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.752 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.648 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.062 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.953 |
| SRR2967015 | Control (Tissue:root) | 3.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.891 |
| SRR9715740 | Leave | 0.222 |
| SRR9715741 | Leave | 0.198 |
| SRR9715739 | Root | 1.205 |
| SRR9715742 | Root | 4.442 |
| SRR9715743 | Root | 3.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.105 |
| SRR8749028 | MeJA induced 9h | 0.153 |
| SRR8749029 | MeJA induced 9h | 0.044 |
| SRR8749030 | Uninduced | 0.141 |
| SRR8749031 | Uninduced | 0.445 |
| SRR8749032 | Uninduced | 0.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.247 |
| SRR8400027 | Control-Root | 10.118 |