Gene detail information of Glyur000174s00018485.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37930.10serine transhydroxymethyltransferase 1
NRXP_004490468.10PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cicer arietinum]
COGYP_001180837.14.00E-118serine hydroxymethyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|P34899|GLYM_PEA0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|V7B8V9|V7B8V9_PHAVU0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00174204508212948+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000174s00018485.1PF00464.14SHMT334332.90E-194


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.254
SRR1783600control42.699
SRR1783602moderate drought stress31.634
SRR1811619moderate drought stress30.699

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain87.660
DRR006520Root Summer glycyrrhizin high producing strain85.909
DRR006521Root Winter glycyrrhizin high producing strain21.465
DRR006522Root Winter glycyrrhizin high producing strain21.094
DRR006523Root Summer glycyrrhizin low producing strain33.728
DRR006524Root Summer glycyrrhizin low producing strain34.501
DRR006525Leaf Summer glycyrrhizin high producing strain9.008
DRR006526Leaf Summer glycyrrhizin high producing strain9.031

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)88.631
SRR2868004Drought Stress(Tissue:root)76.232
SRR2967015Control (Tissue:root)80.783

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.247
SRR9715740Leave15.150
SRR9715741Leave19.998
SRR9715739Root7.976
SRR9715742Root31.455
SRR9715743Root28.145

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h54.600
SRR8749028MeJA induced 9h38.717
SRR8749029MeJA induced 9h41.889
SRR8749030Uninduced16.407
SRR8749031Uninduced14.313
SRR8749032Uninduced14.747

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root70.462
SRR8400027Control-Root83.791

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved