Gene detail information of Glyur000174s00018489.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17830.1 | 2.00E-37 | Peptidase M20/M25/M40 family protein |
| NR | XP_003611482.1 | 7.83E-48 | N-acetylornithine deacetylase-like protein [Medicago truncatula] |
| Swissprot | tr|Q9C5C4|ARGE_ARATH | 2.00E-43 | Acetylornithine deacetylase |
| trEMBL | tr|G7JZY6|G7JZY6_MEDTR | 3.00E-48 | M20 peptidase acetylornithine deacetylase {ECO:0000313|EMBL:AES94440.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00174 | 226754 | 228317 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01438 | argE | EC:3.5.1.16 | 2-Oxocarboxylic acid metabolism | map01210 |
| Biosynthesis of amino acids | map01230 | |||
| Arginine biosynthesis | map00220 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.384 |
| SRR1783600 | control | 1.845 |
| SRR1783602 | moderate drought stress | 3.605 |
| SRR1811619 | moderate drought stress | 2.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.044 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.770 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.650 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.878 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.996 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.129 |
| SRR2967015 | Control (Tissue:root) | 0.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.692 |
| SRR9715740 | Leave | 1.726 |
| SRR9715741 | Leave | 1.224 |
| SRR9715739 | Root | 0.250 |
| SRR9715742 | Root | 0.369 |
| SRR9715743 | Root | 0.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.204 |
| SRR8749028 | MeJA induced 9h | 0.525 |
| SRR8749029 | MeJA induced 9h | 0.847 |
| SRR8749030 | Uninduced | 0.597 |
| SRR8749031 | Uninduced | 0.400 |
| SRR8749032 | Uninduced | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.498 |
| SRR8400027 | Control-Root | 1.024 |