Gene detail information of Glyur000175s00012034.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G12250.12.00E-154UDP-D-glucuronate 4-epimerase 5
NRKEH31675.10UDP-D-glucuronate 4-epimerase [Medicago truncatula]
COGYP_003710181.18.00E-108NAD-dependent epimerase/dehydratase [Waddlia chondrophila WSU 86-1044]
Swissprottr|O81312|GAE3_ARATH0UDP-glucuronate 4-epimerase 3
trEMBLtr|A0A072V0K9|A0A072V0K9_MEDTR0UDP-D-glucuronate 4-epimerase {ECO:0000313|EMBL:KEH31675.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001754490247894-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08679E5.1.3.6 EC:5.1.3.6 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016857  racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000175s00012034.1PF01370.16Epimerase983348.40E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.185
SRR1783600control13.721
SRR1783602moderate drought stress14.904
SRR1811619moderate drought stress14.973

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.666
DRR006520Root Summer glycyrrhizin high producing strain16.187
DRR006521Root Winter glycyrrhizin high producing strain10.784
DRR006522Root Winter glycyrrhizin high producing strain10.321
DRR006523Root Summer glycyrrhizin low producing strain17.178
DRR006524Root Summer glycyrrhizin low producing strain16.982
DRR006525Leaf Summer glycyrrhizin high producing strain6.311
DRR006526Leaf Summer glycyrrhizin high producing strain6.116

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.325
SRR2868004Drought Stress(Tissue:root)16.507
SRR2967015Control (Tissue:root)12.593

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.351
SRR9715740Leave9.247
SRR9715741Leave7.390
SRR9715739Root32.875
SRR9715742Root29.336
SRR9715743Root28.487

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.873
SRR8749028MeJA induced 9h7.564
SRR8749029MeJA induced 9h6.202
SRR8749030Uninduced3.456
SRR8749031Uninduced0.764
SRR8749032Uninduced2.217

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.230
SRR8400027Control-Root27.899

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved