Gene detail information of Glyur000175s00012039.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22680.1 | 5.00E-77 | myb domain protein 85 |
| NR | XP_003516672.1 | 3.36E-143 | PREDICTED: protein ODORANT1 [Glycine max] |
| Swissprot | tr|Q50EX6|ODO1_PETHY | 1.00E-108 | Protein ODORANT1 |
| trEMBL | tr|A0A072UQP4|A0A072UQP4_MEDTR | 2.00E-139 | Myb transcription factor {ECO:0000313|EMBL:KEH31681.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 62262 | 64115 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012039.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 2.40E-13 |
| Glyur000175s00012039.1 | PF00249.26 | Myb_DNA-binding | 70 | 111 | 2.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.974 |
| SRR1783600 | control | 2.063 |
| SRR1783602 | moderate drought stress | 1.973 |
| SRR1811619 | moderate drought stress | 1.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.723 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.741 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.662 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.138 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.271 |
| SRR2967015 | Control (Tissue:root) | 11.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.624 |
| SRR9715740 | Leave | 1.433 |
| SRR9715741 | Leave | 0.293 |
| SRR9715739 | Root | 1.444 |
| SRR9715742 | Root | 2.831 |
| SRR9715743 | Root | 2.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.127 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.057 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.071 |
| SRR8400027 | Control-Root | 6.253 |