Gene detail information of Glyur000175s00012044.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51790.1 | 2.00E-29 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_009362828.1 | 9.87E-51 | PREDICTED: transcription factor bHLH120 [Pyrus x bretschneideri] |
| Swissprot | tr|Q9FLI0|BH120_ARATH | 4.00E-35 | Transcription factor bHLH120 |
| trEMBL | tr|A0A061G5T3|A0A061G5T3_THECC | 3.00E-50 | Basic helix-loop-helix DNA-binding superfamily protein, putative {ECO:0000313|EMBL:EOY24562.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 87745 | 88778 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012044.1 | PF00010.21 | HLH | 31 | 83 | 8.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.066 |
| SRR1811619 | moderate drought stress | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.914 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.361 |
| SRR2967015 | Control (Tissue:root) | 1.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.748 |
| SRR9715740 | Leave | 0.533 |
| SRR9715741 | Leave | 0.653 |
| SRR9715739 | Root | 0.077 |
| SRR9715742 | Root | 0.129 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.679 |
| SRR8749028 | MeJA induced 9h | 9.685 |
| SRR8749029 | MeJA induced 9h | 10.626 |
| SRR8749030 | Uninduced | 20.188 |
| SRR8749031 | Uninduced | 20.695 |
| SRR8749032 | Uninduced | 8.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.015 |
| SRR8400027 | Control-Root | 0.044 |