Gene detail information of Glyur000175s00012054.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22910.1 | 0 | FIZZY-related 2 |
| NR | XP_004515787.1 | 0 | PREDICTED: protein FIZZY-RELATED 2-like [Cicer arietinum] |
| COG | YP_007143558.1 | 5.00E-29 | (myosin heavy-chain) kinase [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q8L3Z8|FZR2_ARATH | 0 | Protein FIZZY-RELATED 2 |
| trEMBL | tr|V7CE57|V7CE57_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 123449 | 129300 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012054.1 | PF00400.27 | WD40 | 212 | 240 | 0.015 |
| Glyur000175s00012054.1 | PF00400.27 | WD40 | 245 | 277 | 0.0022 |
| Glyur000175s00012054.1 | PF00400.27 | WD40 | 288 | 323 | 4.60E-07 |
| Glyur000175s00012054.1 | PF00400.27 | WD40 | 329 | 368 | 3.20E-06 |
| Glyur000175s00012054.1 | PF00400.27 | WD40 | 417 | 453 | 2.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.468 |
| SRR1783600 | control | 22.623 |
| SRR1783602 | moderate drought stress | 21.390 |
| SRR1811619 | moderate drought stress | 21.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.001 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.935 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.781 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.635 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.704 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.431 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.490 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.813 |
| SRR2967015 | Control (Tissue:root) | 25.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.913 |
| SRR9715740 | Leave | 29.601 |
| SRR9715741 | Leave | 31.528 |
| SRR9715739 | Root | 17.567 |
| SRR9715742 | Root | 25.638 |
| SRR9715743 | Root | 24.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.992 |
| SRR8749028 | MeJA induced 9h | 15.257 |
| SRR8749029 | MeJA induced 9h | 8.846 |
| SRR8749030 | Uninduced | 9.675 |
| SRR8749031 | Uninduced | 4.564 |
| SRR8749032 | Uninduced | 7.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.236 |
| SRR8400027 | Control-Root | 28.519 |