Gene detail

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Gene detail information of Glyur000175s00012058.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62990.1	1.00E-119	KNOTTED-like homeobox of Arabidopsis thaliana 7
NR	XP_007158449.1	0	hypothetical protein PHAVU_002G153300g [Phaseolus vulgaris]
Swissprot	tr\|P46606\|HD1_BRANA	1.00E-160	Homeobox protein HD1
trEMBL	tr\|V7CM51\|V7CM51_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30443.1}

Sequence

Transcript Sequence

>Glyur000175s00012058.1
ATGCAAGAAGAAGCAGGGGGGTTGGGAATGATGAGTGGTGGTGGTTTAAGCGGAGAGGTGTCACTGTCAGCATCCGGCGACCACCAGCACCGTCAGGTGAAGGCGGAGATAGCCACACACCCACTGTATGAGCAGCTTCTGGCTGCACACGTGTCATGCATCCGCGTGGCCACTCCCATCGACCACCTCCCACTCATCGACGCCCAGTTGTCACAGTCCCACCACCTCCTTCACTCTTATTATGCTGCCTCTCACTCTCACTCTCACCATCCCCATTCCCTCTCCCCTCGCGACCGACAAGACCTTGACAACTTCCTGGCACAATATTTGATAGTGTTGTGTACGTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCATGCTGTGGAGGCTGTCATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTAACAGGAGTGAGTTTAGGAGAAGGAACGGGTGCAACAATGTCAGATGATGAAGAAGATTTTCAAATGGATATTTCTTTAGACCAGCCAAGCTCTGAGGGGCATGACATGACGGGATTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGGCAAGAACTAAAGATNGAGCTGAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGAAGAGCTGGGAAATTACCGGGTGACACAACATCTGTTTTAAAGACCTGGTGGCAACAACATGCCAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAACTGGTTCATCAACCAAAGGAAACGCAACTGGCACAACAACTCTCAATCGGTTACGTGTCTGAAATCCAAGCGCAAGAGGTAGAGAGATTTAGTTCCTATATATGGATATATGGAACAGATTGCAACAAAGTATATATATTTGGACTCACTTTATGCTGATTGCTGACAGAGAGTATTCCAGTCAGGTGCAGGACATGATAGGCGGAGCACTGTAAAATTTAGATAGCTTTAGAAAAAACTGGTTGTAAATTCATGGATTTGAACGGATGCAAACTCTTCTCTTCCAGCTTTGGTTGCCTTCATTTTTGTAAAGTTCTTTTGTAACCCTTTTTTTGCTATGTTTTGAGTGGCTGAAGAAGAAGAATTGATGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00175	151050	154898	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000175s00012058.1	PF03790.8	KNOX1	32	74	1.10E-16
Glyur000175s00012058.1	PF03791.8	KNOX2	93	147	3.00E-17
Glyur000175s00012058.1	PF03789.8	ELK	203	224	1.20E-05
Glyur000175s00012058.1	PF05920.6	Homeobox_KN	243	282	3.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.591
SRR1783600	control	0.584
SRR1783602	moderate drought stress	0.249
SRR1811619	moderate drought stress	0.274

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.888
DRR006520	Root Summer glycyrrhizin high producing strain	0.889
DRR006521	Root Winter glycyrrhizin high producing strain	0.438
DRR006522	Root Winter glycyrrhizin high producing strain	0.456
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.928

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.593
SRR2868004	Drought Stress(Tissue:root)	2.485
SRR2967015	Control (Tissue:root)	1.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.842
SRR9715740	Leave	2.721
SRR9715741	Leave	2.130
SRR9715739	Root	0.540
SRR9715742	Root	0.950
SRR9715743	Root	0.287

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.138
SRR8749028	MeJA induced 9h	0.605
SRR8749029	MeJA induced 9h	0.107
SRR8749030	Uninduced	1.139
SRR8749031	Uninduced	0.111
SRR8749032	Uninduced	0.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.823
SRR8400027	Control-Root	2.462