Gene detail information of Glyur000175s00012061.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45680.1 | 2.00E-53 | TCP family transcription factor |
| NR | XP_003549867.1 | 1.11E-143 | PREDICTED: transcription factor TCP9-like [Glycine max] |
| Swissprot | tr|O64647|TCP9_ARATH | 5.00E-69 | Transcription factor TCP9 |
| trEMBL | tr|I1MUS2|I1MUS2_SOYBN | 4.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G14160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 170779 | 171906 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012061.1 | PF03634.8 | TCP | 87 | 192 | 5.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.445 |
| SRR1783600 | control | 16.336 |
| SRR1783602 | moderate drought stress | 26.441 |
| SRR1811619 | moderate drought stress | 26.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.608 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.049 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.952 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.555 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.669 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.033 |
| SRR2967015 | Control (Tissue:root) | 26.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.372 |
| SRR9715740 | Leave | 15.727 |
| SRR9715741 | Leave | 24.277 |
| SRR9715739 | Root | 52.137 |
| SRR9715742 | Root | 65.187 |
| SRR9715743 | Root | 54.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.388 |
| SRR8749028 | MeJA induced 9h | 25.010 |
| SRR8749029 | MeJA induced 9h | 35.816 |
| SRR8749030 | Uninduced | 19.244 |
| SRR8749031 | Uninduced | 5.235 |
| SRR8749032 | Uninduced | 17.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.798 |
| SRR8400027 | Control-Root | 19.814 |