Gene detail information of Glyur000175s00012062.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G11820.20hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
NRXP_003549866.10PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max]
COGYP_003957743.14.00E-50hydroxymethylglutaryl-CoA synthase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|P54873|HMCS_ARATH0Hydroxymethylglutaryl-CoA synthase
trEMBLtr|I1MUS1|I1MUS1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G14150.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00175173200178229-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01641E2.3.3.10 EC:2.3.3.10 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0008299  isoprenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004421  hydroxymethylglutaryl-CoA synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000175s00012062.1PF01154.12HMG_CoA_synt_N31741.20E-80
Glyur000175s00012062.1PF08540.5HMG_CoA_synt_C1754495.30E-113


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.486
SRR1783600control46.618
SRR1783602moderate drought stress29.283
SRR1811619moderate drought stress29.306

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.639
DRR006520Root Summer glycyrrhizin high producing strain36.644
DRR006521Root Winter glycyrrhizin high producing strain29.024
DRR006522Root Winter glycyrrhizin high producing strain28.216
DRR006523Root Summer glycyrrhizin low producing strain39.593
DRR006524Root Summer glycyrrhizin low producing strain39.326
DRR006525Leaf Summer glycyrrhizin high producing strain18.641
DRR006526Leaf Summer glycyrrhizin high producing strain18.497

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)87.961
SRR2868004Drought Stress(Tissue:root)96.643
SRR2967015Control (Tissue:root)78.862

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.077
SRR9715740Leave37.129
SRR9715741Leave46.345
SRR9715739Root17.163
SRR9715742Root39.361
SRR9715743Root35.997

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.098
SRR8749028MeJA induced 9h37.795
SRR8749029MeJA induced 9h39.443
SRR8749030Uninduced36.621
SRR8749031Uninduced21.239
SRR8749032Uninduced28.882

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.829
SRR8400027Control-Root79.359

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved