Gene detail information of Glyur000175s00012076.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12710.1 | 2.00E-112 | phloem protein 2-A12 |
| NR | XP_003550877.1 | 6.88E-177 | PREDICTED: F-box protein PP2-A12-like [Glycine max] |
| Swissprot | tr|Q9LN77|P2A12_ARATH | 1.00E-140 | F-box protein PP2-A12 |
| trEMBL | tr|I1MUR3|I1MUR3_SOYBN | 3.00E-177 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G14060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 238115 | 240916 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012076.1 | PF14299.1 | PP2 | 108 | 268 | 8.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.727 |
| SRR1783600 | control | 27.858 |
| SRR1783602 | moderate drought stress | 46.473 |
| SRR1811619 | moderate drought stress | 45.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.995 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.460 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.919 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.535 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.794 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.923 |
| SRR2967015 | Control (Tissue:root) | 22.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 43.394 |
| SRR9715740 | Leave | 46.310 |
| SRR9715741 | Leave | 48.372 |
| SRR9715739 | Root | 32.694 |
| SRR9715742 | Root | 25.321 |
| SRR9715743 | Root | 26.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.879 |
| SRR8749028 | MeJA induced 9h | 17.129 |
| SRR8749029 | MeJA induced 9h | 23.773 |
| SRR8749030 | Uninduced | 18.177 |
| SRR8749031 | Uninduced | 30.419 |
| SRR8749032 | Uninduced | 35.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.445 |
| SRR8400027 | Control-Root | 20.799 |