Gene detail information of Glyur000175s00012077.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63100.1 | 6.00E-180 | GRAS family transcription factor |
| NR | XP_004515801.1 | 0 | PREDICTED: scarecrow-like protein 28-like [Cicer arietinum] |
| Swissprot | tr|Q9CAN3|SCL28_ARATH | 0 | Scarecrow-like protein 28 |
| trEMBL | tr|A0A072URL3|A0A072URL3_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:KEH31708.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 247767 | 249860 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012077.1 | PF03514.9 | GRAS | 312 | 681 | 1.10E-121 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.622 |
| SRR1783600 | control | 6.781 |
| SRR1783602 | moderate drought stress | 7.320 |
| SRR1811619 | moderate drought stress | 6.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.092 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.103 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.843 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.560 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.557 |
| SRR2967015 | Control (Tissue:root) | 21.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.492 |
| SRR9715740 | Leave | 0.804 |
| SRR9715741 | Leave | 0.889 |
| SRR9715739 | Root | 0.649 |
| SRR9715742 | Root | 2.178 |
| SRR9715743 | Root | 2.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.780 |
| SRR8749028 | MeJA induced 9h | 11.317 |
| SRR8749029 | MeJA induced 9h | 9.083 |
| SRR8749030 | Uninduced | 0.167 |
| SRR8749031 | Uninduced | 0.036 |
| SRR8749032 | Uninduced | 0.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.184 |
| SRR8400027 | Control-Root | 21.945 |