Gene detail information of Glyur000175s00012082.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12760.18.00E-108Zinc finger, C3HC4 type (RING finger) family protein
NRKEH31714.10zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|Q93Z92|RING4_ARATH1.00E-156E3 ubiquitin-protein ligase At4g11680
trEMBLtr|A0A072UPE3|A0A072UPE3_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH31714.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00175276027280316+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000175s00012082.1PF13639.1zf-RING_23403828.70E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.161
SRR1783600control21.940
SRR1783602moderate drought stress23.837
SRR1811619moderate drought stress23.560

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.711
DRR006520Root Summer glycyrrhizin high producing strain43.992
DRR006521Root Winter glycyrrhizin high producing strain65.453
DRR006522Root Winter glycyrrhizin high producing strain63.610
DRR006523Root Summer glycyrrhizin low producing strain45.211
DRR006524Root Summer glycyrrhizin low producing strain44.507
DRR006525Leaf Summer glycyrrhizin high producing strain16.709
DRR006526Leaf Summer glycyrrhizin high producing strain16.873

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.454
SRR2868004Drought Stress(Tissue:root)60.071
SRR2967015Control (Tissue:root)57.862

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.663
SRR9715740Leave47.699
SRR9715741Leave54.238
SRR9715739Root58.247
SRR9715742Root58.311
SRR9715743Root54.679

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.465
SRR8749028MeJA induced 9h30.165
SRR8749029MeJA induced 9h28.281
SRR8749030Uninduced27.201
SRR8749031Uninduced22.071
SRR8749032Uninduced29.538

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.995
SRR8400027Control-Root50.340

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved