Gene detail information of Glyur000176s00012084.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15710.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | AGI78244.1 | 0 | F-box/kelch-repeat protein [Caragana korshinskii] |
| Swissprot | tr|Q9LFV5|FK111_ARATH | 0 | F-box/kelch-repeat protein At5g15710 |
| trEMBL | tr|M9RSD2|M9RSD2_9FABA | 0 | F-box/kelch-repeat protein {ECO:0000313|EMBL:AGI78244.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 2253 | 5000 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012084.1 | PF00646.28 | F-box | 97 | 139 | 3.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.795 |
| SRR1783600 | control | 2.855 |
| SRR1783602 | moderate drought stress | 3.035 |
| SRR1811619 | moderate drought stress | 3.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.245 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.115 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.602 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.679 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.371 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.388 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.091 |
| SRR2967015 | Control (Tissue:root) | 10.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.469 |
| SRR9715740 | Leave | 3.741 |
| SRR9715741 | Leave | 2.553 |
| SRR9715739 | Root | 4.354 |
| SRR9715742 | Root | 3.775 |
| SRR9715743 | Root | 4.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.474 |
| SRR8749028 | MeJA induced 9h | 9.004 |
| SRR8749029 | MeJA induced 9h | 3.747 |
| SRR8749030 | Uninduced | 3.172 |
| SRR8749031 | Uninduced | 5.421 |
| SRR8749032 | Uninduced | 4.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.452 |
| SRR8400027 | Control-Root | 7.730 |