Gene detail

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Gene detail information of Glyur000176s00012093.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15740.1	0	O-fucosyltransferase family protein
NR	XP_003551780.1	0	PREDICTED: uncharacterized protein At1g04910-like [Glycine max]
Swissprot	tr\|Q8W486\|Y1491_ARATH	5.00E-81	Uncharacterized protein At1g04910
trEMBL	tr\|I1N4S3\|I1N4S3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G51070.1}

Sequence

Transcript Sequence

>Glyur000176s00012093.1
ATGGAAGAGGCAACCAGTGAGGCCTGTGAGGGGATGGGGATGGAGCTCAAAGTTTTGTCAGCTAACAAAATTGAGAAGCATAAGAGGTTCATTATAAGGCCTAGAATCAAGGTGTGGATGGCTAGGGCCATTACAACTGTGGTACTTTGGACTAGTGTTGTTCAGCTGATTGCAATGGGGAAATTGTTGGGGCCAAGTTTGTTAAAGGGCATGCCTTACTGTTTCAGTTCCTCAGTTGCATCTCCAGTTGTAGAAAAGTTTTTGGTTCCAGCCAAGGTTGTGCTCCCACCNAAAAGAATTTATAAGAATAATGGTTATCTTATGGTTTCATGCAACGGAGGACTCAACCAGATGCGAGCAGCAATATGTGACATGGTTGCTATTGCCAGACACTTAAATGCCACTCTCGTAGTTCCAGAGCTGGATAAAACCTCTTTCTGGGATGATTCAAGTGACTTCCAAGATATATTTGATATAGATCATTTCATCACATCCTTGGTAGATGAGGTTCGAATACTAAAGCAACCACCACCTCGGATCAAGAGAAGAATTGAACAAGGACTATCTTACTCATTGTCGCCAATTAGCTGGTCTAGTATCTCCTACTATGAAAATCAGATCCTTCCTTTGTTGCTGAAACACAAGGTGGTACACCTAAACAAAACCGATGCTCGACTTGCGAATAATGGACTACCTACTGAGATTCAAAAGCTGCGATGCCGTGTGAATTTTAATGCTCTAAAGTTTACTTCCCAGATAGAAGAACTAGGTAGAAGGGTAGTCAAGATTTTGAGGGAAAGGGGACCTTTCCTTGTACTTCATCTTAGATATGAGATGGACATGTTGGCCTTTTCTGGCTGTGCTCATGGTTGTGACAGCAAAGAGGTGGAAGAGCTCACAAGAATGAGATATGGTTATCCTTGGTGGAAGGAAAAGGTCATTAATTCTGAACTTAAGAGGAAAGAAGGTTTATGCCCTTTGACACCTGAGGAAACTGCTCTAGCATTGGCAGCACTAGGCATAGATCACAATGTTCAAATTTATATTGCTGCTGGAGAAATATATGGTGGAGAGAGAAGGATGTCAAGTTTACTTGAACAGTTTCCTAACCTGTTGAGGAAGGAAACTCTGCTGGAACCTGCAGATTTGATGTATTTCCAAAATCACTCCTCACAAATGGCTGCACTGGATTATCTTGTCTCTCTAGAGAGTGATATATTTATTCCAACATATGATGGGAACATGGCTAAAGTCGTGGAAGGCCATCGAAGATTTCTAGGATTCAAAAAAACTATACTGTTGGATAGAAGGATTCTGGTACACCTAATAGATCAATACTCTACTGGGTTGTTGAGCTGGGATGAGTTTTCCAGTGCTGTGAAGGAAGCTCATGCCTACAGTATGGGAGGTCCCAAAAGAAGAGTTGTCATTCCAGACAGACCAAAAGAAGAAGACTATTTTTATGCCAATCCTCAGGAATGTTTGCAATTGCTAGATGAACCATTTAAAAGCACATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	42519	45482	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012093.1	PF10250.4	O-FucT	108	430	1.10E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.295
SRR1783600	control	0.327
SRR1783602	moderate drought stress	0.257
SRR1811619	moderate drought stress	0.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.462
DRR006520	Root Summer glycyrrhizin high producing strain	0.463
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.648
DRR006524	Root Summer glycyrrhizin low producing strain	0.710
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.360
SRR2868004	Drought Stress(Tissue:root)	1.768
SRR2967015	Control (Tissue:root)	1.364

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.667
SRR9715740	Leave	0.327
SRR9715741	Leave	0.377
SRR9715739	Root	0.294
SRR9715742	Root	0.672
SRR9715743	Root	0.762

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.499
SRR8749028	MeJA induced 9h	0.441
SRR8749029	MeJA induced 9h	0.283
SRR8749030	Uninduced	0.169
SRR8749031	Uninduced	0.384
SRR8749032	Uninduced	0.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.448
SRR8400027	Control-Root	3.396