Gene detail information of Glyur000176s00012095.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02260.1 | 0 | auxin transport protein (BIG) |
| NR | AES77777.2 | 0 | auxin transporter BIG [Medicago truncatula] |
| Swissprot | tr|Q9SRU2|BIG_ARATH | 0 | Auxin transport protein BIG |
| trEMBL | tr|G7KRX3|G7KRX3_MEDTR | 0 | Auxin transporter BIG {ECO:0000313|EMBL:AES77777.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 49606 | 74252 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBR_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10691 | UBR4, ZUBR1 | EC:2.3.2.27 | Viral carcinogenesis | map05203 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012095.1 | PF00569.12 | ZZ | 2603 | 2635 | 1.20E-09 |
| Glyur000176s00012095.1 | PF13764.1 | E3_UbLigase_R4 | 4173 | 4826 | 9.60E-272 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.115 |
| SRR1783600 | control | 17.223 |
| SRR1783602 | moderate drought stress | 24.550 |
| SRR1811619 | moderate drought stress | 24.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.130 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.666 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.056 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.789 |
| SRR2967015 | Control (Tissue:root) | 25.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.966 |
| SRR9715740 | Leave | 5.610 |
| SRR9715741 | Leave | 5.529 |
| SRR9715739 | Root | 3.539 |
| SRR9715742 | Root | 30.666 |
| SRR9715743 | Root | 26.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.202 |
| SRR8749028 | MeJA induced 9h | 11.754 |
| SRR8749029 | MeJA induced 9h | 2.072 |
| SRR8749030 | Uninduced | 2.827 |
| SRR8749031 | Uninduced | 0.712 |
| SRR8749032 | Uninduced | 0.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.740 |
| SRR8400027 | Control-Root | 17.852 |