Gene detail information of Glyur000176s00012097.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49180.12.00E-142Transducin/WD40 repeat-like superfamily protein
NRXP_006585817.10PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Glycine max]
COGYP_007125206.13.00E-20WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q9M3B4|RID3_ARATH4.00E-175Protein ROOT INITIATION DEFECTIVE 3
trEMBLtr|I1KWK6|I1KWK6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G27980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001767792882501-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000176s00012097.2PF00400.27WD401121481.20E-08
Glyur000176s00012097.2PF00400.27WD401672030.00084
Glyur000176s00012097.2PF00400.27WD402622951.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.202
SRR1783600control15.489
SRR1783602moderate drought stress20.916
SRR1811619moderate drought stress21.037

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.338
DRR006520Root Summer glycyrrhizin high producing strain14.985
DRR006521Root Winter glycyrrhizin high producing strain16.412
DRR006522Root Winter glycyrrhizin high producing strain15.644
DRR006523Root Summer glycyrrhizin low producing strain15.756
DRR006524Root Summer glycyrrhizin low producing strain15.899
DRR006525Leaf Summer glycyrrhizin high producing strain5.479
DRR006526Leaf Summer glycyrrhizin high producing strain5.789

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.071
SRR2868004Drought Stress(Tissue:root)23.074
SRR2967015Control (Tissue:root)23.630

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.670
SRR9715740Leave14.814
SRR9715741Leave16.094
SRR9715739Root8.914
SRR9715742Root16.803
SRR9715743Root14.247

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.197
SRR8749028MeJA induced 9h6.598
SRR8749029MeJA induced 9h6.825
SRR8749030Uninduced2.544
SRR8749031Uninduced0.730
SRR8749032Uninduced2.474

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.254
SRR8400027Control-Root15.638

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved