Gene detail

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Gene detail information of Glyur000176s00012106.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15790.2	1.00E-71	RING/U-box superfamily protein
NR	XP_003531881.1	1.79E-142	PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Glycine max]
Swissprot	tr\|Q8LE94\|RING3_ARATH	6.00E-82	E3 ubiquitin-protein ligase At3g02290
trEMBL	tr\|I1KWJ4\|I1KWJ4_SOYBN	7.00E-143	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G27730.5}

Sequence

Transcript Sequence

>Glyur000176s00012106.1
GATTCCTCCACCCACTCCACAAGGGCAACAGAGAGAGAGAGAGAGAGACAAAACCAAGTGTTATGCTATGCAGTGCTTCCTCTAATTTGGCGAATTTATTCATAGCAAAAATCGCCAAAAATTTCAAAATCCCCTTTTTAGAAAACCCGATTTCTCAAATCCAAAAGAATCTCAATTCTTCTCCACCTTCATCTATTTCTCTTGTCCCCAACAACAACATCGTTAGAAAAAAAAACTCTCAGGTGATCAAGAGAACCAGAACCTGCTTATCCATATTACAGATCACCTGAACAAAAGAGGGAGGGTACTGGTTTGCGGAGGCATTGGGACTCCTGCAAGCTTAGAATCCTCTCTCCTTTATCTATTTATTTAAGCATAGTCATTGGTTAGTGCTGCTGGGGGCTCCTTTTTCCCGTAGCGTGCATGTGGCACCATCAATATTTTGGTGATCTGTTGAGCTGAGAAGTGAGAGGATTTTAAGCTAAAAGAGGGAAAGAGATTGAATAAAGAGGGAAAGAGATTGAAGCTGAAATAATGGGTTCTATTTGTTCTTGTTTGAGTGTTGATGATTTTGAAGATTATATGAATCCTGATAGTCATGTATATAGGAACTGCGTGTGTCTCAGTTGCTTCCTACAAAACCTTTTGAATGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATTCGATTCCTTCATCTATACAGGGGGCAGCATCCATGACTTCTACAGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCATGCCTTATGATGCAGACCCTAGGTATTTCCGCTCACAGCATGACGGACTAATTTCAAGACGCGAGAAGGGTTCCAGTCATTTGAATGAGGAGTCAGAACCTCTAAGGGGTGATATAGATTCAGAATCTTTGAATTCGAGTGATAAATGGAATGAATGTGCTGGTGAAGATGGATCAAAGGAATACNGTTCTAAGTCCTTGGTAAGACTTTCATCTGCAAAACTTACAACTGGAGCTGGGCTTGTCTACGCATCATCGGAAGAGGAGGATTGTTGTCCAACTTGTCTCGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAGCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAATCTTGATTAAAAGTTTTTGTCGTTGATGATGCCAGCAACAGAGGAAAGGAAAAATACAAGTATAGACACTGTGAATACTTCAGATAAGCACTTATCATGTATAGTAAATATATATATAAGTTTTATTAACCATCATCATTGTAAGTTTGATCTCATCAAGTTGTTTCCACATTTATACTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	113242	116924	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012106.1	PF12678.2	zf-rbx1	171	215	3.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.141
SRR1783600	control	12.190
SRR1783602	moderate drought stress	22.273
SRR1811619	moderate drought stress	22.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.412
DRR006520	Root Summer glycyrrhizin high producing strain	24.272
DRR006521	Root Winter glycyrrhizin high producing strain	32.010
DRR006522	Root Winter glycyrrhizin high producing strain	31.446
DRR006523	Root Summer glycyrrhizin low producing strain	26.034
DRR006524	Root Summer glycyrrhizin low producing strain	26.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.872
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	25.168
SRR2868004	Drought Stress(Tissue:root)	35.412
SRR2967015	Control (Tissue:root)	37.172

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	16.464
SRR9715740	Leave	17.592
SRR9715741	Leave	20.799
SRR9715739	Root	6.240
SRR9715742	Root	15.141
SRR9715743	Root	12.462

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.157
SRR8749028	MeJA induced 9h	43.412
SRR8749029	MeJA induced 9h	30.183
SRR8749030	Uninduced	11.921
SRR8749031	Uninduced	34.650
SRR8749032	Uninduced	20.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	28.169
SRR8400027	Control-Root	24.023