Gene detail information of Glyur000177s00010899.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04360.10limit dextrinase
NRXP_004496127.10PREDICTED: pullulanase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_003704690.10alpha-1,6-glucosidase [Truepera radiovictrix DSM 17093]
Swissprottr|Q8GTR4|PULA1_ARATH0Pullulanase 1, chloroplastic (Precursor)
trEMBLtr|A0A072VMS0|A0A072VMS0_MEDTR0Alpha-1,6-glucosidase, pullulanase-type protein {ECO:0000313|EMBL:KEH43309.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001776386776798+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000177s00010899.1PF02922.13CBM_481992843.30E-12
Glyur000177s00010899.1PF11852.3DUF33728009576.30E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.168
SRR1783600control40.126
SRR1783602moderate drought stress48.967
SRR1811619moderate drought stress53.773

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.413
DRR006520Root Summer glycyrrhizin high producing strain32.962
DRR006521Root Winter glycyrrhizin high producing strain9.278
DRR006522Root Winter glycyrrhizin high producing strain8.711
DRR006523Root Summer glycyrrhizin low producing strain24.781
DRR006524Root Summer glycyrrhizin low producing strain24.449
DRR006525Leaf Summer glycyrrhizin high producing strain8.335
DRR006526Leaf Summer glycyrrhizin high producing strain8.170

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.052
SRR2868004Drought Stress(Tissue:root)22.900
SRR2967015Control (Tissue:root)21.155

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.110
SRR9715740Leave15.281
SRR9715741Leave14.650
SRR9715739Root9.409
SRR9715742Root31.795
SRR9715743Root27.670

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.939
SRR8749028MeJA induced 9h0.878
SRR8749029MeJA induced 9h0.746
SRR8749030Uninduced0.280
SRR8749031Uninduced0.092
SRR8749032Uninduced0.348

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.726
SRR8400027Control-Root52.789

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved