Gene detail information of Glyur000177s00010902.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04390.1 | 7.00E-57 | C2H2-type zinc finger family protein |
| NR | XP_007144239.1 | 3.46E-152 | hypothetical protein PHAVU_007G139600g [Phaseolus vulgaris] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 1.00E-47 | Zinc finger protein ZAT5 |
| trEMBL | tr|V7BH81|V7BH81_PHAVU | 1.00E-152 | Uncharacterized protein {ECO:0000313|EMBL:ESW16233.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00177 | 88625 | 89716 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000177s00010902.1 | PF13912.1 | zf-C2H2_6 | 149 | 174 | 2.80E-10 |
| Glyur000177s00010902.1 | PF13912.1 | zf-C2H2_6 | 232 | 257 | 9.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.667 |
| SRR1783600 | control | 0.549 |
| SRR1783602 | moderate drought stress | 0.277 |
| SRR1811619 | moderate drought stress | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.588 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.109 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.170 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.921 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.896 |
| SRR2967015 | Control (Tissue:root) | 4.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.160 |
| SRR9715740 | Leave | 0.406 |
| SRR9715741 | Leave | 0.239 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.277 |
| SRR9715743 | Root | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.061 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.062 |
| SRR8400027 | Control-Root | 3.022 |