Gene detail information of Glyur000177s00010907.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58330.20lactate/malate dehydrogenase family protein
NRXP_007144250.10hypothetical protein PHAVU_007G140600g [Phaseolus vulgaris]
COGYP_003709604.19.00E-124malate dehydrogenase [Waddlia chondrophila WSU 86-1044]
Swissprottr|O48902|MDHP_MEDSA0Malate dehydrogenase [NADP], chloroplastic (Precursor)
trEMBLtr|V7BEI7|V7BEI7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW16244.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00177126689131162-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00051E1.1.1.82 EC:1.1.1.82 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0046554  malate dehydrogenase (NADP+) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000177s00010907.1PF00056.18Ldh_1_N952421.40E-32
Glyur000177s00010907.1PF02866.13Ldh_1_C2454147.70E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.567
SRR1783600control2.594
SRR1783602moderate drought stress3.035
SRR1811619moderate drought stress3.044

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.400
DRR006520Root Summer glycyrrhizin high producing strain4.149
DRR006521Root Winter glycyrrhizin high producing strain1.900
DRR006522Root Winter glycyrrhizin high producing strain1.969
DRR006523Root Summer glycyrrhizin low producing strain5.702
DRR006524Root Summer glycyrrhizin low producing strain5.606
DRR006525Leaf Summer glycyrrhizin high producing strain145.816
DRR006526Leaf Summer glycyrrhizin high producing strain143.872

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.007
SRR2868004Drought Stress(Tissue:root)21.143
SRR2967015Control (Tissue:root)5.692

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave116.757
SRR9715740Leave183.807
SRR9715741Leave145.890
SRR9715739Root5.361
SRR9715742Root8.329
SRR9715743Root8.103

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.411
SRR8749028MeJA induced 9h6.309
SRR8749029MeJA induced 9h6.901
SRR8749030Uninduced2.387
SRR8749031Uninduced0.734
SRR8749032Uninduced1.088

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.012
SRR8400027Control-Root8.351

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved