Gene detail information of Glyur000177s00010909.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20510.12.00E-130OPC-8:0 CoA ligase1
NRXP_004496136.10PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum]
COGYP_004963122.16.00E-1104-coumarate:CoA ligase [Streptomyces bingchenggensis BCW-1]
Swissprottr|Q84P21|4CLL5_ARATH1.00E-1644-coumarate--CoA ligase-like 5
trEMBLtr|K7LKF3|K7LKF3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G34161.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00177136766138820+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10526OPCL1 EC:6.2.1.- alpha-Linolenic acid metabolism map00592


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000177s00010909.1PF00501.23AMP-binding654673.10E-90
Glyur000177s00010909.1PF13193.1AMP-binding_C4775526.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.192
SRR1783600control0.190
SRR1783602moderate drought stress0.178
SRR1811619moderate drought stress0.155

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.063
DRR006520Root Summer glycyrrhizin high producing strain0.063
DRR006521Root Winter glycyrrhizin high producing strain0.195
DRR006522Root Winter glycyrrhizin high producing strain0.191
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.954
DRR006526Leaf Summer glycyrrhizin high producing strain1.091

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.241
SRR2868004Drought Stress(Tissue:root)1.312
SRR2967015Control (Tissue:root)0.553

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.212
SRR9715740Leave0.327
SRR9715741Leave0.325
SRR9715739Root0.000
SRR9715742Root0.242
SRR9715743Root0.071

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.432
SRR8749028MeJA induced 9h0.248
SRR8749029MeJA induced 9h0.284
SRR8749030Uninduced0.074
SRR8749031Uninduced0.162
SRR8749032Uninduced0.261

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.199
SRR8400027Control-Root0.265