Gene detail information of Glyur000177s00010909.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G20510.1 | 2.00E-130 | OPC-8:0 CoA ligase1 |
NR | XP_004496136.1 | 0 | PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum] |
COG | YP_004963122.1 | 6.00E-110 | 4-coumarate:CoA ligase [Streptomyces bingchenggensis BCW-1] |
Swissprot | tr|Q84P21|4CLL5_ARATH | 1.00E-164 | 4-coumarate--CoA ligase-like 5 |
trEMBL | tr|K7LKF3|K7LKF3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G34161.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00177 | 136766 | 138820 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10526 | OPCL1 | EC:6.2.1.- | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000177s00010909.1 | PF00501.23 | AMP-binding | 65 | 467 | 3.10E-90 |
Glyur000177s00010909.1 | PF13193.1 | AMP-binding_C | 477 | 552 | 6.50E-15 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.192 |
SRR1783600 | control | 0.190 |
SRR1783602 | moderate drought stress | 0.178 |
SRR1811619 | moderate drought stress | 0.155 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.063 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.063 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.195 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.191 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.954 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.091 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 1.241 |
SRR2868004 | Drought Stress(Tissue:root) | 1.312 |
SRR2967015 | Control (Tissue:root) | 0.553 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.212 |
SRR9715740 | Leave | 0.327 |
SRR9715741 | Leave | 0.325 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.242 |
SRR9715743 | Root | 0.071 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.432 |
SRR8749028 | MeJA induced 9h | 0.248 |
SRR8749029 | MeJA induced 9h | 0.284 |
SRR8749030 | Uninduced | 0.074 |
SRR8749031 | Uninduced | 0.162 |
SRR8749032 | Uninduced | 0.261 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.199 |
SRR8400027 | Control-Root | 0.265 |