Gene detail information of Glyur000177s00010930.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17860.1 | 2.00E-32 | jasmonate-zim-domain protein 3 |
| NR | XP_004498265.1 | 5.33E-160 | PREDICTED: protein TIFY 6B-like [Cicer arietinum] |
| Swissprot | tr|Q9LVI4|TIF6B_ARATH | 3.00E-37 | Protein TIFY 6B |
| trEMBL | tr|G8A016|G8A016_MEDTR | 3.00E-158 | Jasmonate zim-domain protein {ECO:0000313|EMBL:KEH40585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00177 | 267662 | 270870 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000177s00010930.1 | PF06200.9 | tify | 180 | 214 | 6.60E-18 |
| Glyur000177s00010930.1 | PF09425.5 | CCT_2 | 313 | 337 | 2.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.676 |
| SRR1783600 | control | 60.559 |
| SRR1783602 | moderate drought stress | 64.698 |
| SRR1811619 | moderate drought stress | 64.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.430 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 106.951 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 104.205 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 99.494 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 99.365 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 93.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 93.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 77.923 |
| SRR2868004 | Drought Stress(Tissue:root) | 83.510 |
| SRR2967015 | Control (Tissue:root) | 89.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 151.753 |
| SRR9715740 | Leave | 231.424 |
| SRR9715741 | Leave | 205.673 |
| SRR9715739 | Root | 29.495 |
| SRR9715742 | Root | 53.102 |
| SRR9715743 | Root | 48.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.409 |
| SRR8749028 | MeJA induced 9h | 57.473 |
| SRR8749029 | MeJA induced 9h | 62.389 |
| SRR8749030 | Uninduced | 87.384 |
| SRR8749031 | Uninduced | 108.424 |
| SRR8749032 | Uninduced | 104.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 89.212 |
| SRR8400027 | Control-Root | 71.518 |