Gene detail information of Glyur000178s00013181.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G74960.30fatty acid biosynthesis 1
NRACJ07142.10beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea]
COGYP_004652153.18.00E-1753-oxoacyl-ACP synthase [Parachlamydia acanthamoebae UV-7]
Swissprottr|Q9C9P4|KASC2_ARATH03-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBLtr|D8KXZ0|D8KXZ0_ARAHY0Beta-ketoacyl-ACP synthase II-1 {ECO:0000313|EMBL:ACJ07142.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00178525111474-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09458fabF EC:2.3.1.179 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Biotin metabolismmap00780


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000178s00013181.1PF00109.21ketoacyl-synt1353801.30E-57
Glyur000178s00013181.1PF02801.17Ketoacyl-synt_C3885025.40E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control64.956
SRR1783600control65.965
SRR1783602moderate drought stress90.651
SRR1811619moderate drought stress89.948

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.086
DRR006520Root Summer glycyrrhizin high producing strain47.954
DRR006521Root Winter glycyrrhizin high producing strain30.863
DRR006522Root Winter glycyrrhizin high producing strain29.737
DRR006523Root Summer glycyrrhizin low producing strain38.227
DRR006524Root Summer glycyrrhizin low producing strain38.979
DRR006525Leaf Summer glycyrrhizin high producing strain47.190
DRR006526Leaf Summer glycyrrhizin high producing strain48.292

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)68.879
SRR2868004Drought Stress(Tissue:root)58.060
SRR2967015Control (Tissue:root)62.285

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.063
SRR9715740Leave49.817
SRR9715741Leave57.303
SRR9715739Root53.760
SRR9715742Root69.338
SRR9715743Root66.691

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.177
SRR8749028MeJA induced 9h37.797
SRR8749029MeJA induced 9h23.318
SRR8749030Uninduced23.458
SRR8749031Uninduced15.307
SRR8749032Uninduced19.889

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root102.506
SRR8400027Control-Root101.055

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved