Gene detail information of Glyur000178s00013197.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19180.1 | 2.00E-42 | jasmonate-zim-domain protein 1 |
| NR | KHN07885.1 | 2.53E-122 | Protein TIFY 10A [Glycine soja] |
| Swissprot | tr|Q9LMA8|TI10A_ARATH | 2.00E-52 | Protein TIFY 10A |
| trEMBL | tr|I1LY77|I1LY77_SOYBN | 6.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G17180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 106953 | 109780 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013197.1 | PF06200.9 | tify | 114 | 147 | 3.00E-18 |
| Glyur000178s00013197.1 | PF09425.5 | CCT_2 | 186 | 211 | 3.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.797 |
| SRR1783600 | control | 6.837 |
| SRR1783602 | moderate drought stress | 4.465 |
| SRR1811619 | moderate drought stress | 4.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.171 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.213 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.748 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 89.479 |
| SRR2868004 | Drought Stress(Tissue:root) | 197.517 |
| SRR2967015 | Control (Tissue:root) | 108.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 518.188 |
| SRR9715740 | Leave | 260.902 |
| SRR9715741 | Leave | 678.110 |
| SRR9715739 | Root | 60.894 |
| SRR9715742 | Root | 211.583 |
| SRR9715743 | Root | 172.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.416 |
| SRR8749028 | MeJA induced 9h | 79.484 |
| SRR8749029 | MeJA induced 9h | 92.520 |
| SRR8749030 | Uninduced | 267.733 |
| SRR8749031 | Uninduced | 229.795 |
| SRR8749032 | Uninduced | 291.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 63.079 |
| SRR8400027 | Control-Root | 91.899 |