Gene detail information of Glyur000178s00013198.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19170.1 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_007154563.1 | 0 | hypothetical protein PHAVU_003G129300g [Phaseolus vulgaris] |
| COG | YP_004455771.1 | 2.00E-59 | polygalacturonase [Melissococcus plutonius ATCC 35311] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 2.00E-128 | Probable polygalacturonase |
| trEMBL | tr|V7C8P1|V7C8P1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW26557.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 112169 | 116486 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013198.1 | PF00295.12 | Glyco_hydro_28 | 171 | 448 | 1.40E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.779 |
| SRR1783600 | control | 36.110 |
| SRR1783602 | moderate drought stress | 24.039 |
| SRR1811619 | moderate drought stress | 23.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.091 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.754 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.511 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.632 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.437 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.104 |
| SRR2967015 | Control (Tissue:root) | 26.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.579 |
| SRR9715740 | Leave | 14.991 |
| SRR9715741 | Leave | 16.682 |
| SRR9715739 | Root | 31.305 |
| SRR9715742 | Root | 34.015 |
| SRR9715743 | Root | 32.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.558 |
| SRR8749028 | MeJA induced 9h | 9.632 |
| SRR8749029 | MeJA induced 9h | 5.224 |
| SRR8749030 | Uninduced | 4.465 |
| SRR8749031 | Uninduced | 1.108 |
| SRR8749032 | Uninduced | 1.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.558 |
| SRR8400027 | Control-Root | 29.400 |