Gene detail information of Glyur000178s00013231.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G06050.36.00E-102oxophytodienoate-reductase 3
NRKEH32448.18.05E-14912-oxophytodienoate reductase-like protein [Medicago truncatula]
COGYP_722736.13.00E-73NADH:flavin oxidoreductase [Trichodesmium erythraeum IMS101]
Swissprottr|Q9FEW9|OPR3_SOLLC1.00E-13312-oxophytodienoate reductase 3
trEMBLtr|A0A072UTR0|A0A072UTR0_MEDTR3.00E-14912-oxophytodienoate reductase-like protein {ECO:0000313|EMBL:KEH32448.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00178278221279577-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05894OPR EC:1.3.1.42 alpha-Linolenic acid metabolism map00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0010181  FMN binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000178s00013231.1PF00724.15Oxidored_FMN112188.30E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.005
SRR1783600control1.226
SRR1783602moderate drought stress1.577
SRR1811619moderate drought stress1.932

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.258
DRR006520Root Summer glycyrrhizin high producing strain12.546
DRR006521Root Winter glycyrrhizin high producing strain2.986
DRR006522Root Winter glycyrrhizin high producing strain3.501
DRR006523Root Summer glycyrrhizin low producing strain8.482
DRR006524Root Summer glycyrrhizin low producing strain9.834
DRR006525Leaf Summer glycyrrhizin high producing strain8.481
DRR006526Leaf Summer glycyrrhizin high producing strain9.981

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.415
SRR2868004Drought Stress(Tissue:root)151.178
SRR2967015Control (Tissue:root)37.795

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave174.900
SRR9715740Leave53.396
SRR9715741Leave246.086
SRR9715739Root4.242
SRR9715742Root19.770
SRR9715743Root19.687

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.372
SRR8749028MeJA induced 9h12.190
SRR8749029MeJA induced 9h26.540
SRR8749030Uninduced833.471
SRR8749031Uninduced824.648
SRR8749032Uninduced431.262

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.847
SRR8400027Control-Root12.898

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved