Gene detail information of Glyur000179s00010673.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50760.1 | 7.00E-131 | galacturonosyltransferase-like 2 |
| NR | XP_004509235.1 | 0 | PREDICTED: probable galacturonosyltransferase-like 1-like [Cicer arietinum] |
| COG | YP_007062961.1 | 3.00E-23 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9S7G2|GATL2_ARATH | 7.00E-174 | Probable galacturonosyltransferase-like 2 |
| trEMBL | tr|G7LFJ2|G7LFJ2_MEDTR | 0 | CAZy family GT8 glycosyltransferase {ECO:0000313|EMBL:AET03979.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00179 | 17933 | 18976 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000179s00010673.1 | PF01501.15 | Glyco_transf_8 | 62 | 321 | 5.20E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.711 |
| SRR1783600 | control | 4.424 |
| SRR1783602 | moderate drought stress | 4.262 |
| SRR1811619 | moderate drought stress | 4.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.634 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.412 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.626 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.962 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.690 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.623 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.666 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.918 |
| SRR2967015 | Control (Tissue:root) | 6.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.474 |
| SRR9715740 | Leave | 0.484 |
| SRR9715741 | Leave | 0.432 |
| SRR9715739 | Root | 2.040 |
| SRR9715742 | Root | 2.482 |
| SRR9715743 | Root | 2.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.718 |
| SRR8749028 | MeJA induced 9h | 5.834 |
| SRR8749029 | MeJA induced 9h | 5.036 |
| SRR8749030 | Uninduced | 1.709 |
| SRR8749031 | Uninduced | 0.931 |
| SRR8749032 | Uninduced | 2.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.853 |
| SRR8400027 | Control-Root | 4.785 |