Gene detail information of Glyur000179s00010680.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36810.17.00E-118geranylgeranyl pyrophosphate synthase 1
NRXP_004509239.10PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Cicer arietinum]
COGYP_007133900.11.00E-126Farnesyltranstransferase [Stanieria cyanosphaera PCC 7437]
Swissprottr|Q94ID7|GGPPS_HEVBR0Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBLtr|D6Q1T4|D6Q1T4_MEDSA0Geranylgeranyl-diphosphate synthase {ECO:0000313|EMBL:ADG01841.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001797442875543-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13789GGPS EC:2.5.1.1 2.5.1.10 2.5.1.29 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000179s00010680.1PF00348.12polyprenyl_synt1083505.00E-82


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.586
SRR1783600control65.204
SRR1783602moderate drought stress38.973
SRR1811619moderate drought stress37.913

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.696
DRR006520Root Summer glycyrrhizin high producing strain46.760
DRR006521Root Winter glycyrrhizin high producing strain15.590
DRR006522Root Winter glycyrrhizin high producing strain11.774
DRR006523Root Summer glycyrrhizin low producing strain50.211
DRR006524Root Summer glycyrrhizin low producing strain47.159
DRR006525Leaf Summer glycyrrhizin high producing strain255.425
DRR006526Leaf Summer glycyrrhizin high producing strain206.350

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.514
SRR2868004Drought Stress(Tissue:root)55.042
SRR2967015Control (Tissue:root)44.447

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave289.361
SRR9715740Leave325.453
SRR9715741Leave273.333
SRR9715739Root80.600
SRR9715742Root62.894
SRR9715743Root68.918

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.442
SRR8749028MeJA induced 9h14.141
SRR8749029MeJA induced 9h13.016
SRR8749030Uninduced1.453
SRR8749031Uninduced0.370
SRR8749032Uninduced3.138

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.487
SRR8400027Control-Root71.688

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved