Gene detail information of Glyur000179s00010686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36710.1 | 8.00E-126 | GRAS family transcription factor |
| NR | XP_004509243.1 | 0 | PREDICTED: scarecrow-like protein 15-like [Cicer arietinum] |
| Swissprot | tr|O23210|SCL15_ARATH | 6.00E-164 | Scarecrow-like protein 15 |
| trEMBL | tr|G7LEV2|G7LEV2_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AET03955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00179 | 106402 | 108027 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000179s00010686.1 | PF03514.9 | GRAS | 178 | 540 | 1.30E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.386 |
| SRR1783600 | control | 26.676 |
| SRR1783602 | moderate drought stress | 22.489 |
| SRR1811619 | moderate drought stress | 22.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.255 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.570 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.460 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.726 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.548 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.843 |
| SRR2967015 | Control (Tissue:root) | 11.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.596 |
| SRR9715740 | Leave | 5.561 |
| SRR9715741 | Leave | 11.488 |
| SRR9715739 | Root | 13.002 |
| SRR9715742 | Root | 21.079 |
| SRR9715743 | Root | 18.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.307 |
| SRR8749028 | MeJA induced 9h | 2.918 |
| SRR8749029 | MeJA induced 9h | 2.622 |
| SRR8749030 | Uninduced | 4.226 |
| SRR8749031 | Uninduced | 1.156 |
| SRR8749032 | Uninduced | 4.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.873 |
| SRR8400027 | Control-Root | 4.933 |