Gene detail information of Glyur000179s00010697.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66760.10succinate dehydrogenase 1-1
NRXP_003518027.10PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [Glycine max]
COGYP_001526661.10succinate dehydrogenase flavoprotein subunit [Azorhizobium caulinodans ORS 571]
Swissprottr|O82663|SDHA1_ARATH0Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial (Precursor)
trEMBLtr|I1JCQ7|I1JCQ7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G06400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00179176068182913+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00234SDHA, SDH1 EC:1.3.5.1 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Alzheimer's diseasemap05010
Parkinson's diseasemap05012
Huntington's diseasemap05016
Non-alcoholic fatty liver disease (NAFLD)map04932


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0022900  electron transport chain

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000179s00010697.1PF00890.19FAD_binding_2504461.90E-123
Glyur000179s00010697.1PF02910.15Succ_DH_flav_C4876198.20E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.769
SRR1783600control18.896
SRR1783602moderate drought stress13.622
SRR1811619moderate drought stress13.380

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.735
DRR006520Root Summer glycyrrhizin high producing strain19.726
DRR006521Root Winter glycyrrhizin high producing strain6.622
DRR006522Root Winter glycyrrhizin high producing strain6.320
DRR006523Root Summer glycyrrhizin low producing strain10.490
DRR006524Root Summer glycyrrhizin low producing strain10.466
DRR006525Leaf Summer glycyrrhizin high producing strain44.332
DRR006526Leaf Summer glycyrrhizin high producing strain44.099

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.307
SRR2868004Drought Stress(Tissue:root)37.444
SRR2967015Control (Tissue:root)31.901

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.364
SRR9715740Leave82.813
SRR9715741Leave44.793
SRR9715739Root1.668
SRR9715742Root14.797
SRR9715743Root14.263

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.433
SRR8749028MeJA induced 9h22.070
SRR8749029MeJA induced 9h12.091
SRR8749030Uninduced6.942
SRR8749031Uninduced5.375
SRR8749032Uninduced3.892

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.535
SRR8400027Control-Root24.174

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved